Alignment of MT-CO1 using T-Coffee 6.85

>Homo_sapiens]
------------------------------------MFADRWLFST--NHKDIGTLYLLFGAWAGVLGTALSLLIRAELG
QPGN--LL--GNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMV
EAGAGTGWTVYPPLAGN-YSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLL
SLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAM
MSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKW-S-AAVLWALGFIFLFTVGGLTG
IVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFSGYTLDQTYAKIHFTIM-FIGVNLTFFPQHFLGLS
GMPRRYSDYPDAYTTWNILSSVGSFISLTAVMLMIFMIWEAFAS---KRK-------VL--------M----------VE
EPSMNLEWLYGCPPPYHTFEEPVYMK------S

>Pan_troglodytes]
------------------------------------MFTDRWLFST--NHKDIGTLYLLFGAWAGVLGTALSLLIRAELG
QPGN--LL--GNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMV
EAGAGTGWTVYPPLAGN-YSHPGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLL
SLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAM
MSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKW-S-AAVLWALGFIFLFTVGGLTG
IVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFSGYTLDQTYAKIQFAIM-FIGVNLTFFPQHFLGLS
GMPRRYSDYPDAYTTWNVLSSVGSFISLTAVMLMIFMIWEAFAS---KRK-------VL--------M----------VE
EPSANLEWLYGCPPPYHTFEEPVYMK------S

>Canis_lupus_familiaris]
------------------------------------MFINRWLFST--NHKDIGTLYLLFGAWAGMVGTALSLLIRAELG
QPGT--LL--GDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMV
EAGAGTGWTVYPPLAGN-LAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVLITAVLLLL
SLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAM
MSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKW-S-PAMLWALGFIFLFTVGGLTG
IVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFAHWFPLFSGYTLNDTWAKIHFTIM-FVGVNMTFFPQHFLGLS
GMPRRYSDYPDAYTTWNTVSSMGSFISLTAVMLMIFMIWEAFAS---KRE-------VA--------M----------VE
LTTTNIEWLHGCPPPYHTFEEPTYVIQK-----

>Bos_taurus]
------------------------------------MFINRWLFST--SHKDIGTLYLLFDAWAGMVGTALSLLIRAELG
QPGT--LL--GDDQIYNAVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMV
EAGAGTGWTVYPPLAGN-LAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLL
SLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAM
MSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKW-S-PAMMWALGFIFLFTVGGLTG
IVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIM-FVGVNMTFFPQHFLGLS
GMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFAS---KRE-------VL--------T----------VD
LTTTNLEWLNGCPPPYHTFEEPTYVNLK-----

>Mus_musculus]
------------------------------------MFINRWLFST--NHKDIGTLYLLFGAWAGMVGTALSILIRAELG
QPGA--LL--GDDQIYNVIVTAHAFVMIFFMVMPMMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMV
EAGAGTGWTVYPPLAGN-LAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLL
SLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVTYYSGKKEPFGYMGMVWAM
MSIGFLGFIVWAHHMFTVGLDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKW-S-PAMLWALGFIFLFTVGGLTG
IVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLFSGFTLDDTWAKAHFAIM-FVGVNMTFFPQHFLGLS
GMPRRYSDYPDAYTTWNTVSSMGSFISLTAVLIMIFMIWEAFAS---KRE-------VM--------S----------VS
YASTNLEWLHGCPPPYHTFEEPTYVKVK-----

>Rattus_norvegicus]
------------------------------------MLVNRWLFST--NHKDIGTLYLLFGAWAGMVGTALSILIRAELG
QPGA--LL--GDDQIYNVIVTAHAFVMIFFMVMPMMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMV
EAGAGTGWTVYPPLAGN-LAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLL
SLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVTYYSGKKEPFGYMGMVWAM
MSIGFLGFIVWAHHMFTVGLDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKW-S-PAMLWALGFIFLFTVGGLTG
IVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLFSGYTLNDTWAKAHFAIM-FVGVNMTFFPQHFLGLA
GMPRRYSDYPDAYTTWNTVSSMGSFISLTAVLVMIFMIWEAFAS---KRE-------VL--------S----------IS
YSSTNLEWLHGCPPPYHTFEEPSYVKVK-----

>Gallus_gallus]
-----------------------------------MTFINRWLFST--NHKDIGTLYLIFGTWAGMAGTALSLLIRAELG
QPGT--LL--GDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTV
EAGAGTGWTVYPPLAGN-LAHAGASVDLAIFH-YLAGVSSILGAINFITTIINMKPPALSQYQTPLFVWSVLITAILLLL
SLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVVAYYAGKKEPFGYMGMVWAM
LSIGFLGFIVWAHHMFTVRMDVDTRAYFTSATMIIAIPTGIKVFSWLATLHGGTIKW-D-PPMLWALGFIFLFTIGGLTG
IVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTHWFPLFTGFTLHPSWTKAHFGVM-FTGVNLTFFPQHFLGLA
GMPRRYSDYPDAYTLWNTLSSIGSLISMTAVIMLMFIVWEAFSA---KRK-------VL--------Q----------PE
LTATNIEWIHGCPPPYHTFEEPAFVQVQ----E

>Danio_rerio]
------------------------------------MTITRWFFST--NHKDIGTLYLVFGAWAGMVGTALSLLIRAELS
QPGA--LL--GDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGV
EAGAGTGWTVYPPLAGN-LAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLL
SLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKKEPFGYMGMVWAM
MAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGAIKW-E-TPMLWALGFIFLFTVGGLTG
IVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLFTGYTLNSVWTKIHFGVM-FIGVNLTFFPQHFLGLA
GMPRRYSDYPDAYALWNTVSSIGSLISLVAVIMFLFILWEAFTA---KRE-------VL--------S----------VE
LTATNVEWLHGCPPPYHTFEEPAFVQIQ-S--N

>Drosophila_melanogaster]
--------------------------------------SRQWLFST--NHKDIGTLYFIFGAWAGMVGTSLSILIRAELG
HPGA--LI--GDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPALSLLLVSSMV
ENGAGTGWTVYPPLSAG-IAHGGASVDLAIFSLHLAGISSILGAVNFITTVINMRSTGISLDRMPLFVWSVVITALLLLL
SLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIISQESGKKETFGSLGMIYAM
LAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLATLHGTQLSY-S-PAILWALGFVFLFTVGGLTG
VVLANSSVDIILHDTYYVVAHFHYVLSMGAVFAIMAGFIHWYPLFTGLTLNNKWLKSHFIIM-FIGVNLTFFPQHFLGLA
GMPRRYSDYPDAYTTWNIVSTIGSTISLLGILFFFFIIWESLVS---QRQ-------VI--------Y----------PI
QLNSSIEWYQNTPPAEHSYSELPLLT-N-----

>Anopheles_gambiae]
--------------------------------------SRQWLFST--NHKDIGTLYFIFGAWAGMVGTSLSILIRAELG
HPGA--FI--GDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWMLPPSLTLLISSSMV
ENGAGTGWTVYPPLSSG-IAHAGASVDLAIFSLHLAGISSILGAVNFITTVINMRSPGITLDRMPLFVWSVVITAVLLLL
SLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIITQESGKKETFGNLGMIYAM
LAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLATLHGTQLTY-S-PAMLWAFGFVFLFTVGGLTG
VVLANSSIDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFVHWYPLLTGLTMNPTWLKIQFSIM-FVGVNLTFFPQHFLGLA
GMPRRYSDFPDSYLTWNVVSSLGSTISLFAILYFLFIIWESMIT---QRT-------PA--------F----------PM
QLSSSIEWYHTLPPAEHTYAELPLLTNN-----

>Caenorhabditis_elegans]
----------------------------MNLYKKYQGGLAVWLESS--NHKDIGTLYFIFGLWSGMVGTSFSLLIRLELA
KPGF--FL--SNGQLYNSVITAHAILMIFFMVMPTMIGGFGNWLLPLMLGAPDMSFPRLNNLSFWLLPTSMLLILDACFV
DMGCGTSWTVYPPLST--MGHPGSSVDLAIFSLHAAGLSSILGGINFMCTTKNLRSSSISLEHMTLFVWTVFVTVFLLVL
SLPVLAGAITMLLTDRNLNTSFFDPSTGGNPLIYQHLFWFFGHPEVYILILPAFGIVSQSTLYLTGKKEVFGALGMVYAI
LSIGLIGCVVWAHHMYTVGMDLDSRAYFSAATMVIAVPTGVKVFSWLATLFGMKMVF-N-PLLLWVLGFIFLFTLGGLTG
VVLSNSSLDIILHDTYYVVSHFHYVLSLGAVFGIFTGVTLWWSFITGYVLDKLMMSAVFILL-FIGVNLTFFPLHFAGLH
GFPRKYLDYPDVYSVWNIIASYGSIISTAGLFLFIYVLLESFFS---YRL-------VI--------S----------DY
YSNSSPEYCMSNYVFGHSYQSEIYFSTT-SLKN

>Schizosaccharomyces_pombe]
----------------------------MNSW---WTYVNRWIFST--NAKDIAILYLLFGLVSGIIGSVFSFIIRMELS
APGSQFLS--GNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALT
EEGPGGGWTVYPPLSSI-TSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLL
TLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHIIPSLA-HKPIFGKEGMLWAM
LSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQW-SRVPMLYAIGFLILFTIGGLTG
VILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGL-CGAYYWSPKMFGLMYNETLASIQFWIL-FIGVNIVFGPQHFLGLN
GMPRRIPDYPEAFVGWNFVSSIGSVISILSLFLFMYVMYDQFTS---NRV-------VKTNPYLIPSYFDDNVIFVNEKL
GVAQSIEWLLHSPVHEHAFNTLPTKS------I

>Saccharomyces_cerevisiae]
-------------------------------------MVQRWLYST--NAKDIAVLYFMLAIFSGMAGTAMSLIIRLELA
APGSQYLH--GNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLV
ESGAGTGWTVYPPLSSI-QAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLL
SLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPGFGIISHVVSTYS-KKPVFGEISMVYAM
ASIGLLGFLVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKIFSWLATIHGGSIRL-A-TPMLYAIAFLFLFTMGGLTG
VALANASLDVAFHDTYYVVGHFHYVLSMGAIFSLFAGYYYWSPQILGLNYNEKLAQIQFWLI-FIGANVIFFPMHFLGIN
GMPRRIPDYPDAFAGWNYVASIGSFIATLSLFLFIYILYDQLVNGLNNKVNNKSVIYNKA-----PDFVESNTIFNL-NT
VKSSSIEFLLTSPPAVHSFNTPAVQ-------S

>Kluyveromyces_lactis]
-------------------------------------MIERWLYST--NAKDIAVLYFIFAIFCGMAGTAMSLIIRLELA
APGNQVLS--GNHQLFNVLVVGHAVLIIFFLVMPALIGGFGNYMLPLLIGASDMSFARLNNISFWCLPPALVCLVTSTLV
ESGAGTGWTVYPPLSSI-QAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHRLPLFVWSIFITAFLLLL
SLPVLSAGVTMLLLDRNFNTSFFEVAGGGDPVLYQHLFWFFGHPEVYILIIPGFGIISHIVSTYS-KKPVFGEVSMVYAM
ASIGLLGFLVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKIFSWLATIYGGSIRL-A-VPMLYAIAFLFLFTIGGLTG
VALANASLDVAFHDTYYVVGHFHYVLSMGAIFSLFAGYYYWSPQILGLYYNEKLAQIQFWLI-FVGANVIFLPMHFLGVN
GMPRRIPDYPDAFAGWNYVASIGSIIAVFSLFLFIYILYDQLVNGLENKVNNKSVIYNKG-----PDFVESNQIFAT-NK
IKSSSIEFLLTSPPAVHTFNTPAVQ-------S

>Ashbya_gossypii_ATCC_10895]
------------------------------------MYLQRWLFST--NAKDIAILYFIFSTFCGLAGTAMSFIIRMELS
APGQQYLQ--GQNQLFNVLVTGHTILMVFFLVMPMLIGGFGNYYLPLMIGASDMSFARLNNISFWTLPPTLICLLTSTMV
ESGTGTGWTVYPPLSSI-QSHSGASVDLAIFSLHLTTISSLLGTINFIVTALNMRTNGMTLHKMPLFTWSILITAVMLLM
SLPVLSAGVTMLLMDRNFNTSFFEVQGGGDPILYQHLFWFFGHPEVYIMIVPTFGMMSHIVSTYS-KKPVFGEISMIYTM
GSISLLGFLVWSHHMYVVGLDTDTRAYFTSATMIITIPTSIKVFSWLTTIYGGSLRL-T-TPMLYTLSFLFLFTVGGLTG
VVLANTSLDVAFHDTYYVVTHFHYVLSLGAVFSMFAGYYYWSPTVLGLNYNEKLSQIQFWLI-FLGTNIIFFPMHFLGIN
GMPRRIPDYPDTFTGWNLVSSFGSMMTIMSLMLFTYIIYDQLMNGLTNKVNNKSINYMKT-----PDFIESNNIFLM-NT
TKSSSIEFMLNSPPTIHSFNTPTIQ-------S

>Arabidopsis_thaliana]
-----------------------------------MKNLVRWLFST--NHKDIGTLYFIFGAIAGVMGTCFSVLIRMELA
RPGDQILG--GNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALV
EVGSGTGWTVYPPLSGI-TSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLL
SLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHIVSTFS-GKPVFGYLGMVYAM
ISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIQY-K-TPMLFAVGFIFLFTIGGLTG
IVLANSGLDIALHDTYYVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLGQIHFWIT-FFGVNLTFFPMHFLGLS
GMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRC-------APS-----PWA----------LE
LNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK

>Oryza_sativa_Indica_Group]
-----------------------------------MTNLVRWLFST--NHKDIGTLYFIFGAIAGVMGTCFSVLIRMELA
RPGDQILG--GNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALV
EVGSGTGWTVYPPLSGI-TSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLL
SLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHIVSTFS-RKPVFGYLGMVYAM
ISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIQY-K-TPMLFAVGFIFLFTIGGLTG
IVLANSGLDIALHDTYYVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLGQIHFWIT-FFGVNLTFFPMHFLGLS
GMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVAITSSSGKNKRC-------AES-----PWA----------VE
QNPTTLEWLVQSPPAFHTFGELPAIKETKS---

>Plasmodium_falciparum]
RLTWMDNTRLFQSITAVAGTVWIKYFSFISEPHVIFIVLNRYSLITNCNHKTLGLYYLWFSFLFGSYGFLLSVILRTELY
SSSLR-IIAQENVNLYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLVILSTAA
EFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHLRAKGLTLGILSVSTWSLIITSGMLLL
TLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILPAFGVISHVISTNY-CRNLFGNQSMILAM
GCIAVLGSLVWVHHMYTTGLEVDTRAYFTSTTILISIPTGTKVFNWICTYMSSNFGMIH-SSSLLSLLFICTFTFGGTTG
VILGNAAIDVALHDTYYVIAHFHFVLSIGAIIGLFTTVSAFQDNFFGKNLRENSIVILWSMLFFVGVILTFLPMHFLGFN
VMPRRIPDYPDALNGWNMICSIGSTMTLFGLLIFK---------------------------------------------
---------------------------------